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Bioconductor - ArrayExpress (development version)

ArrayExpress

This is the development version of ArrayExpress; for the stable release version, see ArrayExpress.

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: Development (3.22)

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")
ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script Reference Manual PDF NEWS Text Details biocViews DataImport, Microarray, OneChannel, Software, TwoChannel Version 1.69.0 In Bioconductor since BioC 2.3 (R-2.8) (16.5 years) License Artistic-2.0 Depends R (>= 2.9.0), Biobase(>= 2.4.0) Imports oligo, limma, httr, utils, jsonlite, rlang, tools, methods System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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