This is the development version of simpleSingleCell; for the stable release version, see simpleSingleCell.
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with BioconductorBioconductor version: Development (3.22)
Once a proud workflow package, this is now a shell of its former self. Almost all of its content has been cannibalized for use in the "Orchestrating Single-Cell Analyses with Bioconductor" book at https://osca.bioconductor.org. Most vignettes here are retained as reminders of the glory that once was, also providing redirection for existing external links to the relevant OSCA book chapters.
Author: Aaron Lun [aut, cre], Davis McCarthy [aut], John Marioni [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
Citation (from within R, entercitation("simpleSingleCell")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("simpleSingleCell")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simpleSingleCell")Follow Installation instructions to use this package in your R session.
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