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Bioconductor - scaeData (development version)

This is the development version of scaeData; for the stable release version, see scaeData.

Bioconductor version: Development (3.22)

Contains default datasets used by the Bioconductor package SingleCellAlleleExperiment. The raw FASTQ files were sourced from publicly accessible datasets provided by 10x Genomics. Subsequently, our scIGD snakemake workflow was employed to process these FASTQ files. The resulting output from scIGD constitutes to the contents of this data package.

Author: Ahmad Al Ajami [aut, cre] ORCID: 0009-0006-5615-7447 , Jonas Schuck [aut] ORCID: 0009-0003-5705-4579 , Federico Marini [aut] ORCID: 0000-0003-3252-7758 , Katharina Imkeller [aut] ORCID: 0000-0002-5177-0852

Maintainer: Ahmad Al Ajami <alajami at med.uni-frankfurt.de>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scaeData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scaeData")

Follow Installation instructions to use this package in your R session.

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