This is the development version of LegATo; for the stable release version, see LegATo.
LegATo: Longitudinal mEtaGenomic Analysis ToolkitBioconductor version: Development (3.22)
LegATo is a suite of open-source software tools for longitudinal microbiome analysis. It is extendable to several different study forms with optimal ease-of-use for researchers. Microbiome time-series data presents distinct challenges including complex covariate dependencies and variety of longitudinal study designs. This toolkit will allow researchers to determine which microbial taxa are affected over time by perturbations such as onset of disease or lifestyle choices, and to predict the effects of these perturbations over time, including changes in composition or stability of commensal bacteria.
Author: Aubrey Odom [aut, cre] ORCID: 0000-0001-7113-7598 , Yilong Zhang [ctb] (Author of NMIT functions), Jared Pincus [csl] (ORCID: ORCID: 0000-0001-6708-5262 , other: Naming consultant of package), Jordan Pincus [art] (Artist of LegATo icon)
Maintainer: Aubrey Odom <aodom at bu.edu>
Citation (from within R, entercitation("LegATo")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("LegATo")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LegATo")Follow Installation instructions to use this package in your R session.
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