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Bioconductor - trackViewer (development version)

trackViewer

This is the development version of trackViewer; for the stable release version, see trackViewer.

A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Bioconductor version: Development (3.22)

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Author: Jianhong Ou [aut, cre] ORCID: 0000-0002-8652-2488 , Julie Lihua Zhu [aut]

Maintainer: Jianhong Ou <jou at morgridge.org>

Citation (from within R, enter citation("trackViewer")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("trackViewer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("trackViewer")
Details biocViews Software, Visualization Version 1.45.1 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License GPL (>= 2) Depends R (>= 3.5.0), grDevices, methods, GenomicRanges, grid Imports GenomeInfoDb, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, S4Vectors, rtracklayer, BiocGenerics, scales, tools, IRanges, AnnotationDbi, grImport, htmlwidgets, InteractionSet, utils, rhdf5, strawr, txdbmaker System Requirements URL See More Suggests biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr, htmltools, rmarkdown, motifStack Linking To Enhances Depends On Me Imports Me geomeTriD, NADfinder Suggests Me ATACseqQC, ChIPpeakAnno Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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