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Bioconductor - spatialSimGP (development version)

spatialSimGP

This is the development version of spatialSimGP; for the stable release version, see spatialSimGP.

Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

Bioconductor version: Development (3.22)

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Author: Kinnary Shah [aut, cre] ORCID: 0000-0001-7098-2116 , Boyi Guo [aut] ORCID: 0000-0003-2950-2349 , Stephanie C. Hicks [aut] ORCID: 0000-0002-7858-0231

Maintainer: Kinnary Shah <kinnaryshahh at gmail.com>

Citation (from within R, enter citation("spatialSimGP")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("spatialSimGP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialSimGP")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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