This is the development version of spaSim; for the stable release version, see spaSim.
Spatial point data simulator for tissue imagesBioconductor version: Development (3.22)
A suite of functions for simulating spatial patterns of cells in tissue images. Output images are multitype point data in SingleCellExperiment format. Each point represents a cell, with its 2D locations and cell type. Potential cell patterns include background cells, tumour/immune cell clusters, immune rings, and blood/lymphatic vessels.
Author: Yuzhou Feng [aut, cre] ORCID: 0000-0002-2955-4053 , Anna Trigos [aut] ORCID: 0000-0002-5915-2952
Maintainer: Yuzhou Feng <yuzhou.feng at petermac.org>
Citation (from within R, entercitation("spaSim")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("spaSim")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spaSim")Follow Installation instructions to use this package in your R session.
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