This is the development version of smartid; for the stable release version, see smartid.
Scoring and Marker Selection Method Based on Modified TF-IDFBioconductor version: Development (3.22)
This package enables automated selection of group specific signature, especially for rare population. The package is developed for generating specifc lists of signature genes based on Term Frequency-Inverse Document Frequency (TF-IDF) modified methods. It can also be used as a new gene-set scoring method or data transformation method. Multiple visualization functions are implemented in this package.
Author: Jinjin Chen [aut, cre] ORCID: 0000-0001-7923-5723
Maintainer: Jinjin Chen <chen.j at wehi.edu.au>
Citation (from within R, entercitation("smartid")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("smartid")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("smartid")Follow Installation instructions to use this package in your R session.
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