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Bioconductor - sigsquared (development version)

sigsquared

This is the development version of sigsquared; for the stable release version, see sigsquared.

Gene signature generation for functionally validated signaling pathways

Bioconductor version: Development (3.22)

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

Author: UnJin Lee

Maintainer: UnJin Lee <unjin at uchicago.edu>

Citation (from within R, enter citation("sigsquared")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sigsquared")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigsquared")
Details biocViews Software Version 1.41.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License GPL version 3 Depends R (>= 3.2.0), methods Imports Biobase, survival System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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