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Bioconductor - rBLAST (development version)

rBLAST

This is the development version of rBLAST; for the stable release version, see rBLAST.

R Interface for the Basic Local Alignment Search Tool

Bioconductor version: Development (3.22)

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) running locally to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Author: Michael Hahsler [aut, cre] ORCID: 0000-0003-2716-1405 , Nagar Anurag [aut]

Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>

Citation (from within R, enter citation("rBLAST")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rBLAST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBLAST")
rBLAST: R Interface for the Basic Local Alignment Search Tool HTML R Script Reference Manual PDF NEWS Text INSTALL Text Details See More Package Archives

Follow Installation instructions to use this package in your R session.

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