This is the development version of qsea; for the stable release version, see qsea.
IP-seq data analysis and vizualizationBioconductor version: Development (3.22)
qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.
Author: Matthias Lienhard [aut, cre] ORCID: 0000-0002-2549-3142 , Lukas Chavez [aut] ORCID: 0000-0002-8718-8848 , Ralf Herwig [aut] ORCID: 0000-0002-9335-1760
Maintainer: Matthias Lienhard <lienhard at molgen.mpg.de>
Citation (from within R, entercitation("qsea")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qsea")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qsea")Follow Installation instructions to use this package in your R session.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4