This is the development version of pqsfinder; for the stable release version, see pqsfinder.
Identification of potential quadruplex forming sequencesBioconductor version: Development (3.22)
Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.
Author: Jiri Hon, Dominika Labudova, Matej Lexa and Tomas Martinek
Maintainer: Jiri Hon <jiri.hon at gmail.com>
Citation (from within R, entercitation("pqsfinder")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pqsfinder")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pqsfinder")Follow Installation instructions to use this package in your R session.
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