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Bioconductor - piano (development version)

piano

This is the development version of piano; for the stable release version, see piano.

Platform for integrative analysis of omics data

Bioconductor version: Development (3.22)

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo Wigge <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo Wigge <piano.rpkg at gmail.com>

Citation (from within R, enter citation("piano")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("piano")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("piano")
Details biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization Version 2.25.0 In Bioconductor since BioC 2.12 (R-3.0) (12.5 years) License GPL (>=2) Depends R (>= 3.5) Imports BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea, shiny, DT, htmlwidgets, shinyjs, shinydashboard, visNetwork, scales, grDevices, graphics, stats, utils, methods System Requirements URL http://www.sysbio.se/piano Bug Reports https://github.com/varemo/piano/issues See More Suggests yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown, BiocStyle Linking To Enhances Depends On Me Imports Me CoreGx, PDATK Suggests Me cosmosR, BloodCancerMultiOmics2017 Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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