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Bioconductor - mumosa (development version)

mumosa

This is the development version of mumosa; for the stable release version, see mumosa.

Multi-Modal Single-Cell Analysis Methods

Bioconductor version: Development (3.22)

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("mumosa")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mumosa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mumosa")
Details biocViews ImmunoOncology, RNASeq, SingleCell, Software Version 1.17.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License GPL-3 Depends SingleCellExperiment Imports stats, utils, methods, igraph, Matrix, BiocGenerics, BiocParallel, IRanges, S4Vectors, DelayedArray, DelayedMatrixStats, SummarizedExperiment, BiocNeighbors, BiocSingular, ScaledMatrix, beachmat, scuttle, metapod, scran, batchelor, uwot System Requirements URL http://bioconductor.org/packages/mumosa Bug Reports https://support.bioconductor.org/ See More Package Archives

Follow Installation instructions to use this package in your R session.

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