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Bioconductor - mspms (development version)

mspms

This is the development version of mspms; for the stable release version, see mspms.

Tools for the analysis of MSP-MS data

Bioconductor version: Development (3.22)

This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.

Author: Charlie Bayne [aut, cre] ORCID: 0000-0003-1870-5298

Maintainer: Charlie Bayne <baynec2 at gmail.com>

Citation (from within R, enter citation("mspms")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mspms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mspms")
Details biocViews MassSpectrometry, Preprocessing, Proteomics, Software Version 1.1.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License MIT + file LICENSE Depends R (>= 4.4.0) Imports QFeatures, limma, SummarizedExperiment, magrittr, rlang, dplyr, purrr, stats, tidyr, stringr, ggplot2, ggseqlogo, heatmaply, readr, rstatix, tibble, ggpubr System Requirements URL https://github.com/baynec2/mspms Bug Reports https://github.com/baynec2/mspms/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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