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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/ivygapSE.html below:

Bioconductor - ivygapSE (development version)

ivygapSE

This is the development version of ivygapSE; for the stable release version, see ivygapSE.

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: Development (3.22)

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ivygapSE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ivygapSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")
ivygapSE -- SummarizedExperiment for Ivy-GAP HTML R Script Reference Manual PDF Details biocViews GeneExpression, Sequencing, Software, Survival, Transcription, Visualization Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 3.5.0), SummarizedExperiment Imports shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR System Requirements URL See More Suggests knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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