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Bioconductor - igblastr (development version)

igblastr

This is the development version of igblastr; to use it, please install the devel version of Bioconductor.

User-friendly R Wrapper to IgBLAST

Bioconductor version: Development (3.22)

The igblastr package provides functions to conveniently install and use a local IgBLAST installation from within R. IgBLAST is described at . Online IgBLAST: .

Author: Hervé Pagès [aut, cre] ORCID: 0009-0002-8272-4522 , Ollivier Hyrien [aut, fnd] ORCID: 0000-0003-1909-2542 , Kellie MacPhee [ctb] ORCID: 0009-0008-0993-4009 , Michael Duff [ctb] ORCID: 0009-0008-4279-0756 , Jason Taylor [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("igblastr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("igblastr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("igblastr")
Details biocViews CellBiology, ImmunoOncology, Immunogenetics, Immunology, Software Version 0.99.11 In Bioconductor since BioC 3.22 (R-4.5) License Artistic-2.0 Depends R (>= 4.2.0), tibble, Biostrings Imports methods, utils, stats, tools, R.utils, curl, httr, xml2, rvest, xtable, jsonlite, S4Vectors, IRanges, GenomeInfoDb System Requirements Perl (for install_IMGT_germline_db() only) URL https://bioconductor.org/packages/igblastr Bug Reports https://github.com/HyrienLab/igblastr/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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