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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/idpr.html below:

idpr (development version)

idpr

This is the development version of idpr; for the stable release version, see idpr.

Profiling and Analyzing Intrinsically Disordered Proteins in R

Bioconductor version: Development (3.22)

‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins (IDPs) within R. This package is used to identify known characteristics of IDPs for a sequence of interest with easily reported and dynamic results. Additionally, this package includes tools for IDP-based sequence analysis to be used in conjunction with other R packages. Described in McFadden WM & Yanowitz JL (2022). "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R." PloS one, 17(4), e0266929. .

Author: William M. McFadden [cre, aut], Judith L. Yanowitz [aut, fnd], Michael Buszczak [ctb, fnd]

Maintainer: William M. McFadden <wmm27 at pitt.edu>

Citation (from within R, enter citation("idpr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("idpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("idpr")
Details biocViews CellBiology, Proteomics, Software, StructuralPrediction Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License LGPL (>= 3) Depends R (>= 4.1.0) Imports ggplot2 (>= 3.3.0), magrittr (>= 1.5), dplyr (>= 0.8.5), plyr (>= 1.8.6), jsonlite (>= 1.6.1), rlang (>= 0.4.6), Biostrings(>= 2.56.0), methods (>= 4.0.0) System Requirements URL Bug Reports https://github.com/wmm27/idpr/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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