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Bioconductor - ginmappeR (development version)

ginmappeR

This is the development version of ginmappeR; for the stable release version, see ginmappeR.

Gene Identifier Mapper

Bioconductor version: Development (3.22)

Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (), NCBI Protein, Nucleotide and Gene (), UniProt () and KEGG ( ). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.

Author: Fernando Sola [aut, cre] ORCID: 0000-0003-1685-3270 , Daniel Ayala [aut] ORCID: 0000-0003-2095-1009 , Marina Pulido [aut] ORCID: 0000-0003-1633-4294 , Rafael Ayala [aut] ORCID: 0000-0002-9332-4623 , Lorena López-Cerero [aut] ORCID: 0000-0001-8950-4384 , Inma Hernández [aut] ORCID: 0000-0001-8920-6635 , David Ruiz [aut] ORCID: 0000-0003-4460-5493

Maintainer: Fernando Sola <fsola at us.es>

Citation (from within R, enter citation("ginmappeR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ginmappeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ginmappeR")
Details biocViews Annotation, Genetics, KEGG, Software, ThirdPartyClient Version 1.5.0 In Bioconductor since BioC 3.19 (R-4.4) (1 year) License GPL-3 + file LICENSE Depends Imports KEGGREST, UniProt.ws, XML, rentrez, httr, utils, memoise, cachem, jsonlite, rvest System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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