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Bioconductor - ffpe (development version)

ffpe

This is the development version of ffpe; for the stable release version, see ffpe.

Quality assessment and control for FFPE microarray expression data

Bioconductor version: Development (3.22)

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Citation (from within R, enter citation("ffpe")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ffpe")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ffpe")
Details biocViews GeneExpression, Microarray, QualityControl, Software Version 1.53.0 In Bioconductor since BioC 2.10 (R-2.15) (13.5 years) License GPL (>2) Depends R (>= 2.10.0), TTR, methods Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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