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Bioconductor - epivizrStandalone (development version)

epivizrStandalone

This is the development version of epivizrStandalone; for the stable release version, see epivizrStandalone.

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: Development (3.22)

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epivizrStandalone")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrStandalone")
Introduction to epivizrStandalone HTML Reference Manual PDF NEWS Text LICENSE Text Details biocViews GUI, Infrastructure, Software, Visualization Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License MIT + file LICENSE Depends R (>= 3.2.3), epivizr(>= 2.3.6), methods Imports git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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