This is the development version of epialleleR; for the stable release version, see epialleleR.
Fast, Epiallele-Aware Methylation Caller and ReporterBioconductor version: Development (3.22)
Epialleles are specific DNA methylation patterns that are mitotically and/or meiotically inherited. This package calls and reports cytosine methylation as well as frequencies of hypermethylated epialleles at the level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map (BAM) files as an input. Among other things, this package can also extract and visualise methylation patterns and assess allele specificity of methylation.
Author: Oleksii Nikolaienko [aut, cre] ORCID: 0000-0002-5910-4934
Maintainer: Oleksii Nikolaienko <oleksii.nikolaienko at gmail.com>
Citation (from within R, entercitation("epialleleR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("epialleleR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epialleleR")Follow Installation instructions to use this package in your R session.
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