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Bioconductor - eiR (development version)

eiR

This is the development version of eiR; for the stable release version, see eiR.

Accelerated similarity searching of small molecules

Bioconductor version: Development (3.22)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("eiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")
Details biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization Version 1.49.0 In Bioconductor since BioC 2.12 (R-3.0) (12.5 years) License Artistic-2.0 Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9) System Requirements URL https://github.com/girke-lab/eiR See More Package Archives

Follow Installation instructions to use this package in your R session.

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