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Bioconductor - cellbaseR (development version)

cellbaseR

This is the development version of cellbaseR; for the stable release version, see cellbaseR.

Querying annotation data from the high performance Cellbase web

Bioconductor version: Development (3.22)

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Author: Mohammed OE Abdallah

Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>

Citation (from within R, enter citation("cellbaseR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cellbaseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellbaseR")
Details biocViews Annotation, Software, VariantAnnotation Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Apache License (== 2.0) Depends R (>= 3.4) Imports methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel System Requirements URL https://github.com/melsiddieg/cellbaseR See More Package Archives

Follow Installation instructions to use this package in your R session.

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