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Bioconductor - ccmap (development version)

ccmap

This is the development version of ccmap; for the stable release version, see ccmap.

Combination Connectivity Mapping

Bioconductor version: Development (3.22)

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccmap")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ccmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ccmap")
Details biocViews DifferentialExpression, GeneExpression, Microarray, Software, Transcription Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License MIT + file LICENSE Depends Imports AnnotationDbi(>= 1.36.2), BiocManager (>= 1.30.4), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1) System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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