This is the development version of borealis; for the stable release version, see borealis.
Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolutionBioconductor version: Development (3.22)
Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.
Author: Garrett Jenkinson [aut, cre] ORCID: 0000-0003-2548-098X
Maintainer: Garrett Jenkinson <gargar934 at gmail.com>
Citation (from within R, entercitation("borealis")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("borealis")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("borealis")
Details biocViews Coverage, DNAMethylation, DifferentialMethylation, Sequencing, Software Version 1.13.0 In Bioconductor since BioC 3.15 (R-4.2) (3 years) License GPL-3 Depends R (>= 4.2.0), Biobase Imports doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq, methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang, GenomicRanges System Requirements URL See More Package Archives
Follow Installation instructions to use this package in your R session.
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