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Bioconductor - bioassayR (development version)

bioassayR

This is the development version of bioassayR; for the stable release version, see bioassayR.

Cross-target analysis of small molecule bioactivity

Bioconductor version: Development (3.22)

bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.

Author: Tyler Backman, Ronly Schlenk, Thomas Girke

Maintainer: Thomas Girke <tgirke at citrus.ucr.edu>

Citation (from within R, enter citation("bioassayR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bioassayR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioassayR")
Details biocViews Bioinformatics, CellBasedAssays, DataImport, ImmunoOncology, Infrastructure, Metabolomics, MicrotitrePlateAssay, Proteomics, Software, Visualization Version 1.47.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License Artistic-2.0 Depends R (>= 3.5.0), DBI (>= 0.3.1), RSQLite (>= 1.0.0), methods, Matrix, rjson, BiocGenerics(>= 0.13.8) Imports XML, ChemmineR System Requirements URL https://github.com/girke-lab/bioassayR Bug Reports https://github.com/girke-lab/bioassayR/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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