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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/affylmGUI.html below:

Bioconductor - affylmGUI (development version)

affylmGUI

This is the development version of affylmGUI; for the stable release version, see affylmGUI.

GUI for limma Package with Affymetrix Microarrays

Bioconductor version: Development (3.22)

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Gordon Smyth [aut], Ken Simpson [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affylmGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")
about.html HTML affylmGUI Vignette PDF R Script CustMenu.html HTML Extracting affy and limma objects from affylmGUI files PDF index.html HTML windowsFocus.html HTML Reference Manual PDF NEWS Text Details biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray Version 1.83.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License GPL (>=2) Depends Imports grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, AnnotationDbi, BiocManager, R2HTML, xtable System Requirements URL http://bioinf.wehi.edu.au/affylmGUI/ See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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