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Bioconductor - affycoretools (development version)

affycoretools

This is the development version of affycoretools; for the stable release version, see affycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Bioconductor version: Development (3.22)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("affycoretools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affycoretools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycoretools")
Creating annotated output with \Biocpkg{affycoretools} and ReportingTools HTML R Script Reference Manual PDF NEWS Text Details biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software Version 1.81.0 In Bioconductor since BioC 1.8 (R-2.3) (19 years) License Artistic-2.0 Depends Biobase, methods Imports affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics, DBI, Glimma System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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