This is the development version of VisiumIO; for the stable release version, see VisiumIO.
Import Visium data from the 10X Space Ranger pipelineBioconductor version: Development (3.22)
The package allows users to readily import spatial data obtained from either the 10X website or from the Space Ranger pipeline. Supported formats include tar.gz, h5, and mtx files. Multiple files can be imported at once with *List type of functions. The package represents data mainly as SpatialExperiment objects.
Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Dario Righelli [aut, ctb], Helena Crowell [aut, ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
Citation (from within R, entercitation("VisiumIO")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("VisiumIO")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VisiumIO")Follow Installation instructions to use this package in your R session.
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