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Bioconductor - SomaticSignatures (development version)

SomaticSignatures

This is the development version of SomaticSignatures; for the stable release version, see SomaticSignatures.

Somatic Signatures

Bioconductor version: Development (3.22)

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

Author: Julian Gehring

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("SomaticSignatures")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SomaticSignatures")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SomaticSignatures")
Details biocViews Clustering, GenomicVariation, Sequencing, Software, SomaticMutation, StatisticalMethod, Visualization Version 2.45.0 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License MIT + file LICENSE Depends R (>= 3.5.0), VariantAnnotation, GenomicRanges, NMF Imports S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio, reshape2, NMF, pcaMethods, Biobase, methods, proxy System Requirements URL https://github.com/juliangehring/SomaticSignatures Bug Reports https://support.bioconductor.org See More Package Archives

Follow Installation instructions to use this package in your R session.

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