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Bioconductor - SWATH2stats (development version)

SWATH2stats

This is the development version of SWATH2stats; for the stable release version, see SWATH2stats.

Transform and Filter SWATH Data for Statistical Packages

Bioconductor version: Development (3.22)

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

Author: Peter Blattmann [aut, cre] Moritz Heusel [aut] Ruedi Aebersold [aut]

Maintainer: Peter Blattmann <peter_blattmann at bluewin.ch>

Citation (from within R, enter citation("SWATH2stats")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SWATH2stats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SWATH2stats")
Details biocViews Annotation, ExperimentalDesign, ImmunoOncology, MassSpectrometry, Preprocessing, Proteomics, Software Version 1.39.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License GPL-3 Depends R (>= 2.10.0) Imports data.table, reshape2, ggplot2, stats, grDevices, graphics, utils, biomaRt, methods System Requirements URL https://peterblattmann.github.io/SWATH2stats/ Bug Reports https://github.com/peterblattmann/SWATH2stats See More Package Archives

Follow Installation instructions to use this package in your R session.

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