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Bioconductor - RiboCrypt (development version)

RiboCrypt

This is the development version of RiboCrypt; for the stable release version, see RiboCrypt.

Interactive visualization in genomics

Bioconductor version: Development (3.22)

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Author: Michal Swirski [aut, cre, cph], Haakon Tjeldnes [aut, ctb], Kornel Labun [ctb]

Maintainer: Michal Swirski <michal.swirski at uw.edu.pl>

Citation (from within R, enter citation("RiboCrypt")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RiboCrypt")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RiboCrypt")
Details biocViews RNASeq, RiboSeq, Sequencing, Software Version 1.15.1 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License MIT + file LICENSE Depends R (>= 3.6.0), ORFik(>= 1.13.12) Imports bslib, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap, cowplot, crosstalk, data.table, dplyr, DT, fst, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2, grid, htmlwidgets, httr, IRanges, jsonlite, knitr, markdown, NGLVieweR, plotly, rlang, rclipboard, RCurl, rtracklayer, shiny, shinycssloaders, shinyhelper, shinyjs, shinyjqui, shinyWidgets, stringr, writexl System Requirements URL https://github.com/m-swirski/RiboCrypt Bug Reports https://github.com/m-swirski/RiboCrypt/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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