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Bioconductor - RTNduals (development version)

RTNduals

This is the development version of RTNduals; for the stable release version, see RTNduals.

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: Development (3.22)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Citation (from within R, enter citation("RTNduals")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTNduals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTNduals")
RTNduals: analysis of co-regulation and inference of dual regulons. HTML R Script Reference Manual PDF NEWS Text Details biocViews GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 3.6.3), RTN(>= 2.14.1), methods Imports graphics, grDevices, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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