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Bioconductor - Organism.dplyr (development version)

Organism.dplyr

This is the development version of Organism.dplyr; for the stable release version, see Organism.dplyr.

dplyr-based Access to Bioconductor Annotation Resources

Bioconductor version: Development (3.22)

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

Author: Martin Morgan [aut, cre], Daniel van Twisk [ctb], Yubo Cheng [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("Organism.dplyr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Organism.dplyr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Organism.dplyr")
Details biocViews Annotation, GenomeAnnotation, Sequencing, Software Version 1.37.1 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 4.1.0), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3) Imports RSQLite, S4Vectors, Seqinfo, IRanges, GenomicRanges(>= 1.61.1), GenomicFeatures(>= 1.61.4), AnnotationDbi, rlang, methods, tools, utils, BiocFileCache, DBI, dbplyr, tibble System Requirements URL Bug Reports https://github.com/Bioconductor/Organism.dplyr/issues See More Suggests GenomeInfoDb, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, magick, BiocStyle, ggplot2 Linking To Enhances Depends On Me annotation Imports Me Ularcirc Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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