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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/MethylSeekR.html below:

Bioconductor - MethylSeekR (development version)

MethylSeekR

This is the development version of MethylSeekR; for the stable release version, see MethylSeekR.

Segmentation of Bis-seq data

Bioconductor version: Development (3.22)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Citation (from within R, enter citation("MethylSeekR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MethylSeekR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")
Details biocViews DNAMethylation, MethylSeq, Sequencing, Software Version 1.49.0 In Bioconductor since BioC 2.12 (R-3.0) (12.5 years) License GPL (>=2) Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4) Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2) System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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