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Bioconductor - MethTargetedNGS (development version)

MethTargetedNGS

This is the development version of MethTargetedNGS; for the stable release version, see MethTargetedNGS.

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Development (3.22)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, enter citation("MethTargetedNGS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MethTargetedNGS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")
Details biocViews Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software Version 1.41.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License Artistic-2.0 Depends R (>= 3.1.2), stringr, seqinr, gplots, Biostrings, pwalign Imports utils, graphics, stats System Requirements HMMER3 URL See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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