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Bioconductor - MetaCyto (development version)

MetaCyto

This is the development version of MetaCyto; for the stable release version, see MetaCyto.

MetaCyto: A package for meta-analysis of cytometry data

Bioconductor version: Development (3.22)

This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.

Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte

Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>

Citation (from within R, enter citation("MetaCyto")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaCyto")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaCyto")

Details biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, ImmunoOncology, Preprocessing, Software, StatisticalMethod Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License GPL (>= 2) Depends R (>= 3.4) Imports flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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