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Bioconductor - MetID (development version)

MetID

This is the development version of MetID; for the stable release version, see MetID.

Network-based prioritization of putative metabolite IDs

Bioconductor version: Development (3.22)

This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.

Author: Zhenzhi Li <zzrickli at gmail.com>

Maintainer: Zhenzhi Li <zzrickli at gmail.com>

Citation (from within R, enter citation("MetID")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetID")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetID")
Details biocViews AssayDomain, BiologicalQuestion, Infrastructure, KEGG, Network, ResearchField, Software, StatisticalMethod, Technology, WorkflowStep Version 1.27.0 In Bioconductor since BioC 3.8 (R-3.5) (6.5 years) License Artistic-2.0 Depends R (>= 3.5) Imports utils (>= 3.3.1), stats (>= 3.4.2), devtools (>= 1.13.0), stringr (>= 1.3.0), Matrix (>= 1.2-12), igraph (>= 1.2.1), ChemmineR(>= 2.30.2) System Requirements URL https://github.com/ressomlab/MetID See More Suggests knitr (>= 1.19), rmarkdown (>= 1.8) Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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