This is the development version of KEGGgraph; for the stable release version, see KEGGgraph.
KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorBioconductor version: Development (3.22)
KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.
Author: Jitao David Zhang, with inputs from Paul Shannon and Hervé Pagès
Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>
Citation (from within R, entercitation("KEGGgraph")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("KEGGgraph")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGgraph")Follow Installation instructions to use this package in your R session.
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