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Bioconductor - CytoPipelineGUI (development version)

CytoPipelineGUI

This is the development version of CytoPipelineGUI; for the stable release version, see CytoPipelineGUI.

GUI's for visualization of flow cytometry data analysis pipelines

Bioconductor version: Development (3.22)

This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

Author: Philippe Hauchamps [aut, cre] ORCID: 0000-0003-2865-1852 , Laurent Gatto [aut] ORCID: 0000-0002-1520-2268 , Dan Lin [ctb]

Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>

Citation (from within R, enter citation("CytoPipelineGUI")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CytoPipelineGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoPipelineGUI")
CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline HTML R Script Demonstration of the CytoPipeline R package suite functionalities HTML R Script Reference Manual PDF NEWS Text LICENSE Text Details biocViews FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep Version 1.7.0 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License GPL-3 Depends R (>= 4.4), CytoPipeline Imports shiny, plotly, ggplot2, flowCore System Requirements URL https://uclouvain-cbio.github.io/CytoPipelineGUI Bug Reports https://github.com/UCLouvain-CBIO/CytoPipelineGUI/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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