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Bioconductor - ComplexHeatmap (development version)

ComplexHeatmap

This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.

Make Complex Heatmaps

Bioconductor version: Development (3.22)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre] ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

Details biocViews Sequencing, Software, Visualization Version 2.25.2 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License MIT + file LICENSE Depends R (>= 4.0.0), methods, grid, graphics, stats, grDevices Imports circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools System Requirements URL https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/ See More Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick Linking To Enhances Depends On Me AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, multistateQTL, recoup, sechm, countToFPKM Imports Me airpart, ASURAT, barbieQ, bettr, BindingSiteFinder, BioNERO, blacksheepr, BloodGen3Module, BreastSubtypeR, BulkSignalR, CATALYST, CCPlotR, celda, CeTF, chevreulPlot, chevreulShiny, ClustAll, COCOA, cola, COTAN, CRISPRball, CTexploreR, cytoKernel, Damsel, dar, DEGreport, DEP, diffcyt, diffUTR, dinoR, dominoSignal, ELMER, ELViS, epiregulon.extra, fCCAC, FLAMES, gCrisprTools, GeDi, GeneTonic, GenomicPlot, GenomicSuperSignature, geyser, gINTomics, gmoviz, GRaNIE, hermes, hoodscanR, HybridExpress, InterCellar, iSEE, MAPFX, MatrixQCvis, MesKit, mitology, MOMA, monaLisa, Moonlight2R, MOSClip, MPAC, MultiRNAflow, muscat, musicatk, MWASTools, nipalsMCIA, pathlinkR, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, PRONE, RFLOMICS, RiboCrypt, RUCova, scRNAseqApp, segmenter, shinyDSP, signifinder, simona, simplifyEnrichment, sparrow, SPONGE, TBSignatureProfiler, TMSig, ViSEAGO, Xeva, YAPSA, ProteinGymR, spatialLIBD, bulkAnalyseR, coda4microbiome, conos, DeSciDe, DiscreteGapStatistic, GAPR, GSSTDA, karyotapR, mineSweepR, missoNet, MitoHEAR, MKomics, ogrdbstats, Path.Analysis, PCAPAM50, pkgndep, RepeatedHighDim, rKOMICS, RNAseqQC, RVA, scITD, SeuratExplorer, sigQC, SingleCellComplexHeatMap, spatialGE, spiralize, tidyHeatmap, TransProR, visxhclust, wilson Suggests Me artMS, bambu, clustifyr, CNVRanger, Coralysis, demuxSNP, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, mastR, miaViz, msImpute, plotgardener, projectR, QFeatures, raer, scDblFinder, SPIAT, TCGAbiolinks, TCGAutils, weitrix, curatedPCaData, LegATo, NanoporeRNASeq, BeeBDC, CIARA, circlize, circlizePlus, ClustAssess, ConsensusOPLS, eclust, ggpicrust2, ggsector, grandR, inferCSN, IOHanalyzer, metasnf, multipanelfigure, plotthis, rliger, scCustomize, SCpubr, sfcurve, singleCellHaystack, SpatialDDLS, tinyarray Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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