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Bioconductor - CellMapper (development version)

CellMapper

This is the development version of CellMapper; for the stable release version, see CellMapper.

Predict genes expressed selectively in specific cell types

Bioconductor version: Development (3.22)

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Author: Brad Nelms

Maintainer: Brad Nelms <bnelms.research at gmail.com>

Citation (from within R, enter citation("CellMapper")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CellMapper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellMapper")
Details biocViews GeneExpression, Microarray, Software Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License Artistic-2.0 Depends S4Vectors, methods Imports stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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