This is the development version of CTexploreR; for the stable release version, see CTexploreR.
Explores Cancer Testis GenesBioconductor version: Development (3.22)
The CTexploreR package re-defines the list of Cancer Testis/Germline (CT) genes. It is based on publicly available RNAseq databases (GTEx, CCLE and TCGA) and summarises CT genes' main characteristics. Several visualisation functions allow to explore their expression in different types of tissues and cancer cells, or to inspect the methylation status of their promoters in normal tissues.
Author: Axelle Loriot [aut, cre] ORCID: 0000-0002-5288-8561 , Julie Devis [aut] ORCID: 0000-0001-5525-5666 , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths] ORCID: 0000-0002-1520-2268
Maintainer: Axelle Loriot <axelle.loriot at uclouvain.be>
Citation (from within R, entercitation("CTexploreR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CTexploreR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CTexploreR")Follow Installation instructions to use this package in your R session.
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