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Bioconductor - CSSQ (development version)

CSSQ

This is the development version of CSSQ; for the stable release version, see CSSQ.

Chip-seq Signal Quantifier Pipeline

Bioconductor version: Development (3.22)

This package is desgined to perform statistical analysis to identify statistically significant differentially bound regions between multiple groups of ChIP-seq dataset.

Author: Ashwath Kumar [aut], Michael Y Hu [aut], Yajun Mei [aut], Yuhong Fan [aut]

Maintainer: Fan Lab at Georgia Institute of Technology <yuhong.fan at biology.gatech.edu>

Citation (from within R, enter citation("CSSQ")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CSSQ")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CSSQ")
Details biocViews ChIPSeq, DifferentialPeakCalling, Normalization, Sequencing, Software Version 1.21.0 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License Artistic-2.0 Depends SummarizedExperiment, GenomicRanges, IRanges, S4Vectors, rtracklayer Imports GenomicAlignments, GenomicFeatures, Rsamtools, ggplot2, grDevices, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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