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Bioconductor - CRISPRball (development version)

CRISPRball

This is the development version of CRISPRball; for the stable release version, see CRISPRball.

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Bioconductor version: Development (3.22)

A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.

Author: Jared Andrews [aut, cre] ORCID: 0000-0002-0780-6248 , Jacob Steele [ctb] ORCID: 0000-0001-9924-2226

Maintainer: Jared Andrews <jared.andrews07 at gmail.com>

Citation (from within R, enter citation("CRISPRball")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CRISPRball")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CRISPRball")
Details biocViews CRISPR, GUI, QualityControl, ShinyApps, Software, Visualization Version 1.5.0 In Bioconductor since BioC 3.19 (R-4.4) (1 year) License MIT + file LICENSE Depends R (>= 4.4.0), shinyBS Imports DT, shiny, grid, ComplexHeatmap, InteractiveComplexHeatmap, graphics, stats, ggplot2, plotly, shinyWidgets, shinycssloaders, shinyjqui, dittoSeq, matrixStats, colourpicker, shinyjs, circlize, PCAtools, utils, grDevices, htmlwidgets, methods System Requirements URL https://github.com/j-andrews7/CRISPRball Bug Reports https://support.bioconductor.org/ See More Package Archives

Follow Installation instructions to use this package in your R session.

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