A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/CCPlotR.html below:

Bioconductor - CCPlotR (development version)

CCPlotR

This is the development version of CCPlotR; for the stable release version, see CCPlotR.

Plots For Visualising Cell-Cell Interactions

Bioconductor version: Development (3.22)

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Author: Sarah Ennis [aut, cre] ORCID: 0000-0001-6100-8573 , Pilib Ó Broin [aut], Eva Szegezdi [aut]

Maintainer: Sarah Ennis <ennissarah94 at gmail.com>

Citation (from within R, enter citation("CCPlotR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CCPlotR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCPlotR")
Details biocViews CellBiology, Network, SingleCell, Software, SystemsBiology, Visualization Version 1.7.0 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License MIT + file LICENSE Depends Imports plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, ggbump, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods System Requirements URL https://github.com/Sarah145/CCPlotR Bug Reports https://github.com/Sarah145/CCPlotR/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4