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Bioconductor - CAMERA (development version)

CAMERA

This is the development version of CAMERA; for the stable release version, see CAMERA.

Collection of annotation related methods for mass spectrometry data

Bioconductor version: Development (3.22)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("CAMERA")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")
Atom count expectations with compoundQuantiles PDF Isotope pattern validation with CAMERA PDF Molecule Identification with CAMERA PDF R Script Reference Manual PDF NEWS Text Details biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software Version 1.65.1 In Bioconductor since BioC 2.4 (R-2.9) (16 years) License GPL (>= 2) Depends R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5) Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph System Requirements URL http://msbi.ipb-halle.de/msbi/CAMERA/ Bug Reports https://github.com/sneumann/CAMERA/issues/new See More Package Archives

Follow Installation instructions to use this package in your R session.

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