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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/BubbleTree.html below:

Bioconductor - BubbleTree (development version)

BubbleTree

This is the development version of BubbleTree; for the stable release version, see BubbleTree.

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Bioconductor version: Development (3.22)

CNV analysis in groups of tumor samples.

Author: Wei Zhu <zhuw at medimmune.com>, Michael Kuziora <kuzioram at medimmune.com>, Todd Creasy <creasyt at medimmune.com>, Brandon Higgs <higgsb at medimmune.com>

Maintainer: Todd Creasy <creasyt at medimmune.com>, Wei Zhu <weizhu365 at gmail.com>

Citation (from within R, enter citation("BubbleTree")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BubbleTree")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BubbleTree")
Details biocViews CopyNumberVariation, Coverage, Sequencing, Software Version 2.39.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License LGPL (>= 3) Depends R (>= 3.5), IRanges, GenomicRanges, plyr, dplyr, magrittr Imports BiocGenerics(>= 0.31.6), BiocStyle, Biobase, ggplot2, WriteXLS, gtools, RColorBrewer, limma, grid, gtable, gridExtra, biovizBase, e1071, methods, grDevices, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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