This is the development version of waddR; for the stable release version, see waddR.
Statistical tests for detecting differential distributions based on the 2-Wasserstein distanceBioconductor version: Development (3.22)
The package offers statistical tests based on the 2-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2-Wasserstein distance and testing for differential distributions are provided, as well as a specifically tailored test for differential expression in single-cell RNA sequencing data.
Author: Roman Schefzik [aut], Julian Flesch [cre]
Maintainer: Julian Flesch <julianflesch at gmail.com>
Citation (from within R, entercitation("waddR")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("waddR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("waddR")
Details biocViews DifferentialExpression, SingleCell, Software, StatisticalMethod Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License MIT + file LICENSE Depends R (>= 3.6.0) Imports Rcpp (>= 1.0.1), arm (>= 1.10-1), eva, BiocFileCache(>= 2.6.0), BiocParallel, SingleCellExperiment, parallel, methods, stats System Requirements URL https://github.com/goncalves-lab/waddR.git Bug Reports https://github.com/goncalves-lab/waddR/issues See More Package Archives
Follow Installation instructions to use this package in your R session.
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